I want to know about various opensource tools for comparative crystal structure analysis. I want to study the difference in active site residues as well as flexibility among them.Is there any opensource tool for this type of analysis?
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I personally like OpenAstexViewer and COOT, which allow me both looking at CCP4 electron densities. |
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Not completely sure, but ProFit should be usful for this purpose: http://www.bioinf.org.uk/software/profit/ |
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Visualization can be perfectly done with Jmol, or a Jmol-enabled tool, of which there are various around, see Applications Embedding Jmol. I recommend checking that list, but there might certainly be something of your interest in that list. Are you mostly looking for computational methods, or explorative methods? |
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The Blue Obelisk Exchange: a place that brings together users of Open Data, Open Source, and Open Standards users and developers. It is the place to ask about the use and development of Open Data, Open Source, and Open Standards: how to perform tasks and solve chemical problems with these, or if an ODOSOS tools is available for some task. Or even to ask if someone can provide such a tool. The questions do not require to be about Blue Obelisk solutions itself; they can be about any ODOSOS chemistry tool, service, or database.
